Skip to main content

Dr. Jonathan J. Cole

Limnologist | PhD, Cornell University

Expertise
Freshwater ecosystems, biogeochemistry

Jonathan J. Cole: In Memory
January 14, 1953 - July 25, 2023

Cole had been an emeritus scientist since 2014. Cole was a member of both the National Academy of Sciences and the American Academy of Arts and Sciences. A former president of the Association for the Sciences of Limnology and Oceanography, Cole was also a fellow of the American Association for the Advancement of Science and the American Geophysical Union. He was the author or co-author of about 230 peer reviewed scientific papers and several books.

During his active research career, Cole studied the sources of carbon and its movements in rivers, lakes, and estuaries, with a focus on the connections between these ecosystems and their surrounding watersheds. He and colleagues showed that at a global scale, up to 50 percent of the carbon that is stored in soils is eventually exported to streams, rivers, and lakes, in the form of particles and dissolved organic matter or turned to carbon dioxide in these inland aquatic environments. The realization that inland waters play a role in the regional and global carbon cycle changed the way modelers have approached carbon sequestration on land.

Because of this large transfer of land-based carbon to surface waters, the food webs of aquatic ecosystems are often partially supported by their watersheds. Working in both the Hudson River and in Wisconsin lakes, Cole and colleagues determined the size of this subsidy to fish populations and to invertebrate consumers. To put the question in simple terms, are fish and other aquatic consumers made of carbon that originates from aquatic plants or maple leaves?

Cole’s research showed that a surprisingly large fraction of the biomass of fish (and of the aquatic invertebrates they consume) is derived from land-based carbon. Using ambient radiocarbon (carbon-14), Caraco and Cole determined that organic carbon in the Hudson River is 1,500 to 5,000 years old. Some invertebrates in the Hudson, notably zooplankton, consume this ancient carbon. Thus, the food web in the Hudson is connected to carbon that was sequestered on land thousands of years ago.

Studies of food webs appear solely academic, but these answers have struck a chord with fishermen. As fishing is the second largest recreational activity in the United States, being able to talk with fishermen about where their fish come from offers an exciting opportunity to educate and interest a significant public group about ecology.

Carpenter, Stephen R., Jonathan J. Cole, J.F. Kitchell, and Michael L. Pace. 1999. “Trophic Cascades Revealed in Diverse Ecosystems”. Trends Ecol. Evol. 14: 483-88. http://www.caryinstitute.org/reprints/Pace_et_al_TREE_1999.pdf.
Cole, Jonathan J. 1999. “Aquatic Microbiology for Ecosystem Scientists: New and Recycled Paradigms in Ecological Microbiology”. Ecosystems 2: 215-25. http://www.caryinstitute.org/reprints/Aquatic_Microbiology_for_Ecosystem.pdf.
Caraco, Nina F., and Jonathan J. Cole. 1999. “Human Impact on Nitrate Export: An Analysis Using Major World Rivers”. Ambio 28: 167-70. http://www.caryinstitute.org/reprints/Caraco-Cole_1999_Ambio.pdf.
Caraco, Nina F., and Jonathan J. Cole. 1999. “Regional-Scale Export of C, N, P and Sediment: What River Data Tell Us about Key Controlling Variables”. In J. D. Tenhunen and P. Kabat (eds.). Integrating Hydrology, Ecosystem Dynamics and Biogeochemistry in Complex Landscapes, 239-53. J. Wiley and Sons, Inc., New York.
del Giorgio, P. A., Jonathan J. Cole, Nina F. Caraco, and R.H. Peters. 1999. “Linking Planktonic Biomass Structure to Plankton Metabolism and Net Gas Flux in Northern Temperate Lakes”. Ecology 80: 1422-31.
Carpenter, Stephen R., Jonathan J. Cole, J.F. Kitchell, and Michael L. Pace. 1999. “Predicting Responses of Chlorophyll and Primary Production to Changes in Phosphorus, Grazing, and Dissolved Organic Carbon (Reply to Comment by Nurnberg)”. Limnol. Oceanogr. 44: 1179-82.
Roland, Fábio, Nina F. Caraco, Jonathan J. Cole, and P. A. del Giorgio. 1999. “Rapid and Precise Determination of Dissolved Oxygen by Spectrophotometry: Evaluation of Interference from Color and Turbidity”. Limnol. Oceanogr. 44: 1148-54.
Duarte, C. M., S. Agusti, P. A. del Giorgio, and Jonathan J. Cole. 1999. “Regional Carbon Imbalances in the Oceans: Is the Open Ocean Heterotrophic? [Response : Technical Comments]”. Science 284: 1735. http://www.sciencemag.org/cgi/reprint/284/5421/1735b.pdf.
Roland, Fábio, and Jonathan J. Cole. 1999. “Regulation of Bacterial Growth Efficiency in a Large Turbid Estuary”. Aquat. Microb. Ecol. 20: 31-38.
Reche, I., Michael L. Pace, and Jonathan J. Cole. 1999. “Relationship of Trophic and Chemical Conditions to Photobleaching of Dissolved Organic Matter in Lake Ecosystems”. Biogeochemistry 44: 259-80. http://www.caryinstitute.org/reprints/Reche_et_al_1999_Biogeochem.pdf.
Reche, I., Michael L. Pace, and Jonathan J. Cole. 1998. “Interactions of Photobleaching and Inorganic Nutrients in Determining Bacterial Growth on Colored Dissolved Organic Carbon”. Microb. Ecol. 36: 270-80.
Caraco, Nina F., G. G. Lampman, Jonathan J. Cole, K. E. Limburg, Michael L. Pace, and David T. Fischer. 1998. “Microbial Assimilation of DIN in a Nitrogen Rich Estuary: Implications for Food Quality and Isotope Studies”. Mar. Ecol. Prog. Ser. 167: 59-71.
Pace, Michael L., Jonathan J. Cole, and Stephen R. Carpenter. 1998. “Trophic Cascades and Compensation: Differential Responses of Microzooplankton in Whole Lake Experiments”. Ecology 79: 138-52.
Cole, Jonathan J., and Nina F. Caraco. 1998. “Atmospheric Exchange of Carbon Dioxide in a Low-Wind Oligotrophic Lake Measured by the Addition of SF6”. Limnol. Oceanogr. 43: 647-56. http://www.caryinstitute.org/reprints/Atmospheric_exchange_of_carbon_dioxide_in_a_low-wind_oligotrophic_lake.pdf.
del Giorgio, P. A., and Jonathan J. Cole. 1998. “Bacterial Growth Efficiency in Natural Aquatic Systems”. Ann. Rev. Ecol. Syst. 29: 503-41.
Smith, T. E., R.J. Stevenson, Nina F. Caraco, and Jonathan J. Cole. 1998. “Changes in Phytoplankton Community Structure During the Zebra Mussel (Dreissena Polymorpha) Invasion of the Hudson River (New York)”. J. Plank. Res. 20: 1567-79.
Carpenter, Stephen R., Jonathan J. Cole, T.E. Essington, James R. Hodgson, J.N. Houser, J.F. Kitchell, and Michael L. Pace. 1998. “Evaluating Alternative Explanations in Ecosystem Experiments”. Ecosystems 1: 335-44.
Bastviken, D., Nina F. Caraco, and Jonathan J. Cole. 1998. “Experimental Measurements of Zebra Mussel (Dreissena Polymorpha) Impacts on Phytoplankton Community Composition”. Freshwater Biol. 39: 375-86. http://www.sgnis.org/publicat/papers/ffb39.pdf.
Cole, Jonathan J., and Michael L. Pace. 1998. “Hydrologic Variability of Small, Northern Michigan Lakes Measured by the Addition of Tracers”. Ecosystems 1: 310-20.
Carpenter, Stephen R., Jonathan J. Cole, J.F. Kitchell, and Michael L. Pace. 1998. “Impact of Dissolved Organic Carbon, Phosphorus and Grazing on Phytoplankton Biomass and Production in Experimental Lakes”. Limnol. Oceanogr. 43: 73-80. http://www.caryinstitute.org/reprints/Impact_of_dissolved_organic_carbon_phosphorus_and_grazing.pdf.