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Dr. Jonathan J. Cole

Limnologist | PhD, Cornell University

Expertise
Freshwater ecosystems, biogeochemistry

Jonathan J. Cole: In Memory
January 14, 1953 - July 25, 2023

Cole had been an emeritus scientist since 2014. Cole was a member of both the National Academy of Sciences and the American Academy of Arts and Sciences. A former president of the Association for the Sciences of Limnology and Oceanography, Cole was also a fellow of the American Association for the Advancement of Science and the American Geophysical Union. He was the author or co-author of about 230 peer reviewed scientific papers and several books.

During his active research career, Cole studied the sources of carbon and its movements in rivers, lakes, and estuaries, with a focus on the connections between these ecosystems and their surrounding watersheds. He and colleagues showed that at a global scale, up to 50 percent of the carbon that is stored in soils is eventually exported to streams, rivers, and lakes, in the form of particles and dissolved organic matter or turned to carbon dioxide in these inland aquatic environments. The realization that inland waters play a role in the regional and global carbon cycle changed the way modelers have approached carbon sequestration on land.

Because of this large transfer of land-based carbon to surface waters, the food webs of aquatic ecosystems are often partially supported by their watersheds. Working in both the Hudson River and in Wisconsin lakes, Cole and colleagues determined the size of this subsidy to fish populations and to invertebrate consumers. To put the question in simple terms, are fish and other aquatic consumers made of carbon that originates from aquatic plants or maple leaves?

Cole’s research showed that a surprisingly large fraction of the biomass of fish (and of the aquatic invertebrates they consume) is derived from land-based carbon. Using ambient radiocarbon (carbon-14), Caraco and Cole determined that organic carbon in the Hudson River is 1,500 to 5,000 years old. Some invertebrates in the Hudson, notably zooplankton, consume this ancient carbon. Thus, the food web in the Hudson is connected to carbon that was sequestered on land thousands of years ago.

Studies of food webs appear solely academic, but these answers have struck a chord with fishermen. As fishing is the second largest recreational activity in the United States, being able to talk with fishermen about where their fish come from offers an exciting opportunity to educate and interest a significant public group about ecology.

Howarth, Robert W., Roxanne Marino, and Jonathan J. Cole. 1988. “Nitrogen Fixation in Freshwater, Estuarine and Marine Ecosystems. 2. Biogeochemical Controls”. Limnol. Oceanogr. 33: 688-701.
Howarth, Robert W., Roxanne Marino, J.M. Lane, and Jonathan J. Cole. 1988. “Nitrogen Fixation in Freshwater, Estuarine, and Marine Ecosystems. 1. Rates and Importance”. Limnol. Oceanogr. 33: 669-87.
Caraco, Nina F., Jonathan J. Cole, Gene E. Likens, M.D. Mattson, and S.S. Nolan. 1988. “A Very Imbalanced Nutrient Budget for Mirror Lake, New Hampshire, U.S.A”. Verh. Int. Ver. Limnol. 23: 170-75.
Cole, Jonathan J., S. Honjo, and J. Erez. 1987. “Particulate Flux and Benthic Decomposition of Organic Matter at a Deep-Water Site in the Panama Basin”. Nature 327: 703-4.
McDowell, William H., Jonathan J. Cole, and Charles T. Driscoll. 1987. “Simplified Version of the Ampoule-Persulfate Method for the Determination of Dissolved Organic Carbon”. Can. J. Fish. Aquat. Sci. 44: 214-18.
Likens, Gene E., Jonathan J. Cole, J. Kolasa, J. B. McAninch, M.J. McDonnell, G.G. Parker, and David L. Strayer. 1987. “Status and Future of Ecosystem Science - Cary Conference 1985”. Occasional Publication of the Institute of Ecosystem Studies. Millbrook, NY: Institute of Ecosystem Studies.
Alldredge, A., Jonathan J. Cole, and D.A. Caron. 1986. “Production of Heterotrophic Bacteria on Amorphous Macroaggregates (marine Snow) in Neritic and Open Ocean Waters”. Limnol. Oceanogr. 31: 68-76.
Cole, Jonathan J., and C. Lee. 1986. “Rapid Microbial Metabolism of Betaalanine, a Non-Protein Amino Acid, in Brackish and Oceanic Waters”. Biogeochemistry 2: 299-312.
Cole, Jonathan J., Robert W. Howarth, S.S. Nolan, and Roxanne Marino. 1986. “Sulfate Inhibition of Molybdate Assimilation by Planktonic Algae and Bacteria: Implications for the Aquatic Nitrogen Cycle”. Biogeochemistry 2: 179-96.
Likens, Gene E., B.J. Peterson, and Jonathan J. Cole. 1985. “Species Composition, Distribution, Population, Biomass and Behavior: Periphyton”. In G. E. Likens (ed.). An Ecosystem Approach to Aquatic Ecology: Mirror Lake and Its Environment, 175-77. Springer-Verlag New York, Inc.
Howarth, Robert W., and Jonathan J. Cole. 1985. “Molybdenum Availability, Nitrogen Limitation and Phytoplankton Growth in Natural Waters”. Science 229: 653-55.
Cole, Jonathan J., S. Honjo, and Nina F. Caraco. 1985. “Seasonal Variation in the Flux of Algal Pigments to a Deep-Water Site in the Panama Basin”. Hydrobiologia 122: 193-97.
Cole, Jonathan J. 1985. “Decomposition”. In G. E. Likens (ed.). An Ecosystem Approach to Aquatic Ecology: Mirror Lake and Its Environment, 302-10. Springer-Verlag New York, Inc.
Walter, R. A., R.E. Moeller, David L. Strayer, and Jonathan J. Cole. 1985. “The Profundal Region”. In G. E. Likens (ed.). An Ecosystem Approach to Aquatic Ecology: Mirror Lake and Its Environment, 317-22. Springer-Verlag New York, Inc.
Cole, Jonathan J., Gene E. Likens, and J.E. Hobbie. 1984. “Decomposition of Planktonic Algae in an Oligotrophic Lake”. Oikos 42: 257-66.
Hobbie, J.E., and Jonathan J. Cole. 1984. “Response of a Detrital Foodweb to Eutrophication”. Bull. Mar. Sci. 35: 357-63.
Hobbie, J.E., Jonathan J. Cole, J. Dungan, R.A. Houghton, and B. Peterson. 1984. “Role of Biota in Global CO2 Balance: The Controversy”. BioScience 34: 492-98.
Cole, Jonathan J., William H. McDowell, and Gene E. Likens. 1984. “Sources and Molecular Weight of ‘dissolved’ Organic Carbon in an Oligotrophic Lake”. Oikos 42: 1-9.