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Dr. Jonathan J. Cole

Limnologist | PhD, Cornell University

Expertise
Freshwater ecosystems, biogeochemistry

Jonathan J. Cole: In Memory
January 14, 1953 - July 25, 2023

Cole had been an emeritus scientist since 2014. Cole was a member of both the National Academy of Sciences and the American Academy of Arts and Sciences. A former president of the Association for the Sciences of Limnology and Oceanography, Cole was also a fellow of the American Association for the Advancement of Science and the American Geophysical Union. He was the author or co-author of about 230 peer reviewed scientific papers and several books.

During his active research career, Cole studied the sources of carbon and its movements in rivers, lakes, and estuaries, with a focus on the connections between these ecosystems and their surrounding watersheds. He and colleagues showed that at a global scale, up to 50 percent of the carbon that is stored in soils is eventually exported to streams, rivers, and lakes, in the form of particles and dissolved organic matter or turned to carbon dioxide in these inland aquatic environments. The realization that inland waters play a role in the regional and global carbon cycle changed the way modelers have approached carbon sequestration on land.

Because of this large transfer of land-based carbon to surface waters, the food webs of aquatic ecosystems are often partially supported by their watersheds. Working in both the Hudson River and in Wisconsin lakes, Cole and colleagues determined the size of this subsidy to fish populations and to invertebrate consumers. To put the question in simple terms, are fish and other aquatic consumers made of carbon that originates from aquatic plants or maple leaves?

Cole’s research showed that a surprisingly large fraction of the biomass of fish (and of the aquatic invertebrates they consume) is derived from land-based carbon. Using ambient radiocarbon (carbon-14), Caraco and Cole determined that organic carbon in the Hudson River is 1,500 to 5,000 years old. Some invertebrates in the Hudson, notably zooplankton, consume this ancient carbon. Thus, the food web in the Hudson is connected to carbon that was sequestered on land thousands of years ago.

Studies of food webs appear solely academic, but these answers have struck a chord with fishermen. As fishing is the second largest recreational activity in the United States, being able to talk with fishermen about where their fish come from offers an exciting opportunity to educate and interest a significant public group about ecology.

Coloso, J.J., Michael L. Pace, and Jonathan J. Cole. 2011. “Difficulty in Discerning Drivers of Lake Ecosystem Metabolism With High Frequency Data”. Ecosystems 14: 935-48.
Carpenter, Stephen R., Jonathan J. Cole, Michael L. Pace, Ryan D. Batt, William A. Brock, Timothy J. Cline, J.J. Coloso, et al. 2011. “Early Warnings of Regime Shifts: A Whole-Ecosystem Experiment”. Science 332: 1079-82. doi:10.1126/science 1203672.
Schlesinger, William H., Jonathan J. Cole, A.C. Finzi, and E.A. Holland. 2011. “Introduction to Coupled Biogeochemical Cycles”. Front. Ecol. Environ. 9: 5-8. http://www.caryinstitute.org/reprints/Schlesinger_2011_intro_Frontiers.pdf.
Finzi, A.C., Jonathan J. Cole, S.C. Doney, E.A. Holland, and R.B. Jackson. 2011. “Research Frontiers in the Analysis of Coupled Biogeochemical Cycles”. Front. Ecol. Environ. 9: 74-80.
Coloso, J.J., Jonathan J. Cole, and Michael L. Pace. 2011. “Short-Term Variation in Thermal Stratification Complicates Estimation of Lake Metabolism”. Aquat. Sci. 73: 305-15. http://www.caryinstitute.org/reprints/Coloso_etal_2011_AquatSci.pdf.
Cole, Jonathan J., Stephen R. Carpenter, J.F. Kitchell, Michael L. Pace, Christopher T. Solomon, and Brian C. Weidel. 2011. “Strong Evidence for Terrestrial Support of Zooplankton in Small Lakes Based on Stable Isotopes of Carbon, Nitrogen, and Hydrogen”. Proc. Nat. Acad. Sci. 108: 1975-80. doi:10.1073/pnas.1012807108.
Vachon, D., Y.T. Prairie, and Jonathan J. Cole. 2010. “The Relationship Between Near-Surface Turbulence and Gas Transfer Velocity in Freshwater Systems and Its Implications for Floating Chamber Measurements of Gas Exchange”. Limnol. Oceanogr. 55: 1523-32. http://www.caryinstitute.org/reprints/Vauchon_2010_LO.pdf.
Roland, Fábio, L.O. Vidal, F.S. Pacheco, Nathan Barros, A. Assireu, A.C.P. Cimbleris, Jonathan J. Cole, and B. Ometto. 2010. “Variability of Carbon Dioxide Flux from Tropical (Cerrado) Hydroelectric Reservoirs”. Aquat. Sci. 72: 283-93.
De Vicente, I., E. Ortega-Retuerta, I.P. Mazuecos, Michael L. Pace, Jonathan J. Cole, and I. Reche. 2010. “Variation in Transparent Exopolymer Particles in Relation to Biological and Chemical Factors in Two Contrasting Lake Districts”. Aquat. Sci. 72: 443-53. http://www.caryinstitute.org/reprints/deVicente_2010_AquatSci.pdf.
Hagerthey, S. E., Jonathan J. Cole, and D. Kilbane. 2010. “Aquatic Metabolism in the Everglades: Dominance of Water Column Heterotrophy”. Limnol. Oceanogr. 55: 653-66. http://www.caryinstitute.org/reprints/Hagerthey_2010_LimnOcean.pdf.
Carpenter, Stephen R., Jonathan J. Cole, J.F. Kitchell, and Michael L. Pace. 2010. “Trophic Cascades in Lakes: Lessons and Prospects”. In J. Terborgh and J. Estes (eds). Trophic Cascades, 55-69. Island Press, Washington D.C.
Kosten, Sarian, Fábio Roland, E.H. Van Nes, N. Mazzeo, L.S.L. Sternberg, M. Scheffer, Jonathan J. Cole, and D.M.L. Da Motta Marques. 2010. “Climate-Dependent CO2 Emissions from Lakes”. Global Biogeochem. Cycles 24: GB2007. doi:10.1029/2009GB003618.
Staehr, Peter A., Darren L. Bade, Matthew C. Van de Bogert, G.R. Koch, Craig E. Williamson, Paul C. Hanson, Jonathan J. Cole, and Timothy K. Kratz. 2010. “Lake Metabolism and the Diel Oxygen Technique: State of the Science”. Limnol. Oceanogr. Methods 8: 628-44.
Caraco, Nina F., J.E. Bauer, Jonathan J. Cole, S.T. Petsch, and Peter A. Raymond. 2010. “Millennial-Aged Organic Carbon Subsidies to a Modern River Food Web”. Ecology 91: 2385-93. http://www.caryinstitute.org/reprints/Caraco_2010_Ecology.pdf.
Cole, Jonathan J., Darren L. Bade, D. Bastviken, Michael L. Pace, and Matthew C. Van de Bogert. 2010. “Multiple Approaches to Estimating Air-Water Gas Exchange in Small Lakes”. Limnol. Oceanogr. Methods 8: 285-93. http://www.caryinstitute.org/reprints/Cole_2010_LOMethods.pdf.
Carpenter, Stephen R., William A. Brock, Jonathan J. Cole, and Michael L. Pace. 2009. “Leading Indicators of Phytoplankton Transitions Caused by Resource Competition”. Theoretical Ecology 2: 139-48.
Cole, Jonathan J. 2009. “Production in Pristine Lakes”. Nature 460: 463-64. http://www.caryinstitute.org/reprints/Cole_2009_NatureNV.pdf.
Prairie, Y.T., and Jonathan J. Cole. 2009. “Carbon, Unifying Currency”. In G.E. Likens (ed.). Encyclopedia of Inland Waters, 743-46. Oxford: Elsevier. http://www.caryinstitute.org/reprints/Prairie_Cole_InWaters_Carbon.pdf.
Cole, Jonathan J., and Y.T. Prairie. 2009. “Dissolved CO2”. In G.E. Likens (ed.). Encyclopedia of Inland Waters, 30-34. Oxford: Elsevier. http://www.caryinstitute.org/reprints/Cole_Prairie_InWaters_CO2.pdf.
Cole, Jonathan J. 2009. “Limnology As a Discipline”. In G.E. Likens (ed.). Encyclopedia of Inland Waters, 6-13. Oxford: Elsevier. http://www.caryinstitute.org/reprints/Cole_InWaters_Limn.pdf.