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Dr. Jonathan J. Cole

Limnologist | PhD, Cornell University

Expertise
Freshwater ecosystems, biogeochemistry

Jonathan J. Cole: In Memory
January 14, 1953 - July 25, 2023

Cole had been an emeritus scientist since 2014. Cole was a member of both the National Academy of Sciences and the American Academy of Arts and Sciences. A former president of the Association for the Sciences of Limnology and Oceanography, Cole was also a fellow of the American Association for the Advancement of Science and the American Geophysical Union. He was the author or co-author of about 230 peer reviewed scientific papers and several books.

During his active research career, Cole studied the sources of carbon and its movements in rivers, lakes, and estuaries, with a focus on the connections between these ecosystems and their surrounding watersheds. He and colleagues showed that at a global scale, up to 50 percent of the carbon that is stored in soils is eventually exported to streams, rivers, and lakes, in the form of particles and dissolved organic matter or turned to carbon dioxide in these inland aquatic environments. The realization that inland waters play a role in the regional and global carbon cycle changed the way modelers have approached carbon sequestration on land.

Because of this large transfer of land-based carbon to surface waters, the food webs of aquatic ecosystems are often partially supported by their watersheds. Working in both the Hudson River and in Wisconsin lakes, Cole and colleagues determined the size of this subsidy to fish populations and to invertebrate consumers. To put the question in simple terms, are fish and other aquatic consumers made of carbon that originates from aquatic plants or maple leaves?

Cole’s research showed that a surprisingly large fraction of the biomass of fish (and of the aquatic invertebrates they consume) is derived from land-based carbon. Using ambient radiocarbon (carbon-14), Caraco and Cole determined that organic carbon in the Hudson River is 1,500 to 5,000 years old. Some invertebrates in the Hudson, notably zooplankton, consume this ancient carbon. Thus, the food web in the Hudson is connected to carbon that was sequestered on land thousands of years ago.

Studies of food webs appear solely academic, but these answers have struck a chord with fishermen. As fishing is the second largest recreational activity in the United States, being able to talk with fishermen about where their fish come from offers an exciting opportunity to educate and interest a significant public group about ecology.

Carpenter, Stephen R., William A. Brock, Jonathan J. Cole, and Michael L. Pace. 2009. “Leading Indicators of Phytoplankton Transitions Caused by Resource Competition”. Theoretical Ecology 2: 139-48.
Salomao, M. S. M. B., Jonathan J. Cole, C.A. Clemente, P.B. Silva, R.L. Victoria, L.A. Martinelli, and P.B. de Camargo. 2008. “CO2 and O2 Dynamics in Human-Impacted Watersheds in the State of Sao Paulo, Brazil”. Biogeochemistry 88: 271-83.
Duarte, C. M., Y.T. Prairie, C. Montes, Jonathan J. Cole, R.G. Striegl, J.M. Melack, and J.A. Downing. 2008. “CO2 Emissions from Saline Lakes: A Global Estimate of a Surprisingly Large Flux”. J. Geophys. Res - Biogeo 113: Art.No.G04041.
Coloso, J.J., Jonathan J. Cole, Paul C. Hanson, and Michael L. Pace. 2008. “Depth-Integrated, Continuous Estimates of Metabolism in a Clear-Water Lake”. Can. J. Fish. Aquat. Sci. 65: 712-22.
Bastviken, D., Jonathan J. Cole, Michael L. Pace, and Matthew C. Van de Bogert. 2008. “Fates of Methane from Different Lake Habitats: Connecting Whole-Lake Budgets and CH4 Emissions”. J. Geophys. Res. 113: Art.No.G02024.
Strayer, David L., Michael L. Pace, Nina F. Caraco, Jonathan J. Cole, and Stuart E. G. Findlay. 2008. “Hydrology and Grazing Jointly Control a Large-River Food Web”. Ecology 89: 12-18. http://www.caryinstitute.org/reprints/Strayer_et_al_2008_Ecology.pdf.
Carpenter, Stephen R., William A. Brock, Jonathan J. Cole, J.F. Kitchell, and Michael L. Pace. 2008. “Leading Indicators of Trophic Cascades”. Ecol. Lett. 11: 128-38.
Downing, J.A., Jonathan J. Cole, J.J. Middelburg, R.G. Striegl, C. M. Duarte, P. Kortelainen, Y.T. Prairie, and K.A. Laube. 2008. “Sediment Organic Carbon Burial in Agriculturally Eutrophic Impoundments over the Last Century”. Global Biogeochem. Cycles 22: GB1018.
Solomon, Christopher T., Stephen R. Carpenter, Jonathan J. Cole, and Michael L. Pace. 2008. “Support of Benthic Invertebrates by Detrital Resources and Current Autochthonous Primary Production: Results from a Whole-Lake C-13 Addition”. Freshwater Biol. 53: 42-54.
Goodwin, K., Nina F. Caraco, and Jonathan J. Cole. 2008. “Temporal Dynamics of Dissolved Oxygen in a Floating Leaved Macrophyte Bed”. Freshwater Biol. 53: 1632-41.
Preston, N.D., Stephen R. Carpenter, Jonathan J. Cole, and Michael L. Pace. 2008. “Airborne Carbon Deposition on a Remote Forested Lake”. Aquat. Sci. 70: 213-24. doi:10.1007/s00027-008-8074-5.
Weidel, Brian C., Stephen R. Carpenter, Jonathan J. Cole, James R. Hodgson, J.F. Kitchell, Michael L. Pace, and Christopher T. Solomon. 2008. “Carbon Sources Supporting Fish Growth in North Temperate Lakes”. Aquat. Sci. 70: 446-58. doi:10.1007/s00027-008-8113-2.
Fernald, S. H., Nina F. Caraco, and Jonathan J. Cole. 2007. “Changes in Cyanobacterial Dominance Following the Invasion of the Zebra Mussel Dreissena Polymorpha: Long-Term Results from the Hudson River Estuary”. Estuaries and Coasts 30: 163-70. http://www.caryinstitute.org/reprints/Fernald_et_al_Estuaries_2007.pdf.
Weidel, Brian C., T. Ushikubo, Stephen R. Carpenter, N.T. Kita, Jonathan J. Cole, J.F. Kitchell, Michael L. Pace, and J.W. Valley. 2007. “Diary of a Bluegill (Lepomis macrochirus): Daily Delta C-13 and Delta O-18 Records in Otoliths by Ion Microprobe”. Can. J. Fish. Aquat. Sci. 64: 1641-45.
Baines, Stephen B., N.S. Fisher, and Jonathan J. Cole. 2007. “Dissolved Organic Matter and Persistence of the Invasive Zebra Mussel (Dreissena Polymorpha) under Low Food Conditions”. Limnol. Oceanogr. 52: 70-78. http://www.caryinstitute.org/reprints/Baines_et_al_2007_L_and_O.pdf.
Pace, Michael L., Stephen R. Carpenter, Jonathan J. Cole, J.J. Coloso, J.F. Kitchell, James R. Hodgson, J.J. Middelburg, N.D. Preston, Christopher T. Solomon, and Brian C. Weidel. 2007. “Does Terrestrial Organic Carbon Subsidize the Plankton Food Web in a Clear-Water Lake?”. Limnol. Oceanogr. 52: 2177-89.
Dodds, Walter K., and Jonathan J. Cole. 2007. “Expanding the Concept of Trophic State in Aquatic Ecosystems: It’s Not Just the Autotrophs”. Aquat. Sci. 69: 427-39. http://www.caryinstitute.org/reprints/Dodds_and_Cole_Aquat_Sci_2007.pdf.
Sobek, Sebastian, Lars J. Tranvik, Y.T. Prairie, P. Kortelainen, and Jonathan J. Cole. 2007. “Patterns and Regulation of Dissolved Organic Carbon: An Analysis of 7,500 Widely Distributed Lakes”. Limnol. Oceanogr. 52: 1208-19. http://www.caryinstitute.org/reprints/Sobek_et_al_L_and_O_2007.pdf.
Cole, Jonathan J., Y.T. Prairie, Nina F. Caraco, William H. McDowell, Lars J. Tranvik, R.G. Striegl, C. M. Duarte, et al. 2007. “Plumbing the Global Carbon Cycle: Integrating Inland Waters into the Terrestrial Carbon Budget”. Ecosystems 10: 171-84. http://www.caryinstitute.org/reprints/Cole_et_al_Ecosystems_2007.pdf.
Bade, Darren L., Stephen R. Carpenter, Jonathan J. Cole, Michael L. Pace, E.S. Kritzberg, Matthew C. Van de Bogert, R.M. Cory, and D.M. McKnight. 2007. “Sources and Fates of Dissolved Organic Carbon in Lakes As Determined by Whole-Lake Carbon Isotope Additions”. Biogeochemistry 84: 115-29.