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Dr. Jonathan J. Cole

Limnologist | PhD, Cornell University

Expertise
Freshwater ecosystems, biogeochemistry

Jonathan J. Cole: In Memory
January 14, 1953 - July 25, 2023

Cole had been an emeritus scientist since 2014. Cole was a member of both the National Academy of Sciences and the American Academy of Arts and Sciences. A former president of the Association for the Sciences of Limnology and Oceanography, Cole was also a fellow of the American Association for the Advancement of Science and the American Geophysical Union. He was the author or co-author of about 230 peer reviewed scientific papers and several books.

During his active research career, Cole studied the sources of carbon and its movements in rivers, lakes, and estuaries, with a focus on the connections between these ecosystems and their surrounding watersheds. He and colleagues showed that at a global scale, up to 50 percent of the carbon that is stored in soils is eventually exported to streams, rivers, and lakes, in the form of particles and dissolved organic matter or turned to carbon dioxide in these inland aquatic environments. The realization that inland waters play a role in the regional and global carbon cycle changed the way modelers have approached carbon sequestration on land.

Because of this large transfer of land-based carbon to surface waters, the food webs of aquatic ecosystems are often partially supported by their watersheds. Working in both the Hudson River and in Wisconsin lakes, Cole and colleagues determined the size of this subsidy to fish populations and to invertebrate consumers. To put the question in simple terms, are fish and other aquatic consumers made of carbon that originates from aquatic plants or maple leaves?

Cole’s research showed that a surprisingly large fraction of the biomass of fish (and of the aquatic invertebrates they consume) is derived from land-based carbon. Using ambient radiocarbon (carbon-14), Caraco and Cole determined that organic carbon in the Hudson River is 1,500 to 5,000 years old. Some invertebrates in the Hudson, notably zooplankton, consume this ancient carbon. Thus, the food web in the Hudson is connected to carbon that was sequestered on land thousands of years ago.

Studies of food webs appear solely academic, but these answers have struck a chord with fishermen. As fishing is the second largest recreational activity in the United States, being able to talk with fishermen about where their fish come from offers an exciting opportunity to educate and interest a significant public group about ecology.

Raymond, Peter A., Nina F. Caraco, and Jonathan J. Cole. 1997. “CO2 Concentration and Atmospheric Flux in the Hudson River”. Estuaries 20: 381-90. http://www.caryinstitute.org/reprints/CO2_concentration_and_atmospheric_flux_in_the_Hudson_River.pdf.
Schindler, D.E., Stephen R. Carpenter, Jonathan J. Cole, J.F. Kitchell, and Michael L. Pace. 1997. “Influence of Food Web Structure on Carbon Exchange Between Lakes and the Atmosphere”. Science 277: 248-51. http://www.caryinstitute.org/reprints/Schindler_et_al_Science_1997.pdf.
del Giorgio, P. A., and Jonathan J. Cole. 1997. “Photosynthesis or Planktonic Respiration [reply to Comments of R. J. Geider, 388:132.]”. Nature 388: 132-33.
del Giorgio, P. A., Jonathan J. Cole, and A. Cimberlis. 1997. “Respiration Rates in Bacteria Exceed Phytoplankton Production in Unproductive Aquatic Systems”. Nature 385: 148-51. http://www.caryinstitute.org/reprints/delGiorgio_et_al_1997_Nature.pdf.
Cottingham, Kathryn L., S.E. Knight, Stephen R. Carpenter, Jonathan J. Cole, Michael L. Pace, and A.E. Wagner. 1997. “Response of Phytoplankton and Bacteria to Nutrients and Zooplankton: A Mesocosm Experiment”. J. Plank. Res. 19: 995-1010.
Caraco, Nina F., Jonathan J. Cole, Peter A. Raymond, David L. Strayer, Michael L. Pace, Stuart E. G. Findlay, and David T. Fischer. 1997. “Zebra Mussel Invasion in a Large, Turbid River: Phytoplankton Response to Increased Grazing”. Ecology 78: 588-602. http://www.caryinstitute.org/reprints/zebra_mussel_phyto.pdf.
Roditi, H. A., Nina F. Caraco, Jonathan J. Cole, and David L. Strayer. 1996. “Filtration of Hudson River Water by the Zebra Mussel (Dreissena Polymorpha)”. Estuaries 19: 824-32. http://www.sgnis.org/publicat/est824.htm.
Christensen, D.L., Stephen R. Carpenter, Kathryn L. Cottingham, S.E. Knight, J.P. LeBouton, D.E. Schindler, N. Voichick, Jonathan J. Cole, and Michael L. Pace. 1996. “Pelagic Responses to Changes in Dissolved Organic Carbon Following Division of a Seepage Lake”. Limnol. Oceanogr. 41: 553-59.
Pace, Michael L., and Jonathan J. Cole. 1996. “Regulation of Bacteria by Resources and Predation Tested in Whole-Lake Experiments”. Limnol. Oceanogr. 41: 1448-60.
Felip, M., Michael L. Pace, and Jonathan J. Cole. 1996. “Regulation of Planktonic Bacterial Growth Rates: The Effects of Temperature and Resources”. Microb. Ecol. 31: 15-28.
Cole, Jonathan J., and Michael L. Pace. 1995. “Bacterial Secondary Production in Oxic and Anoxic Freshwaters”. Limnol. Oceanogr. 40: 1019-27. http://www.caryinstitute.org/reprints/Bacterial_secondary_production_in_oxic_and_anoxic_freshwaters.pdf.
Carpenter, Stephen R., D.L. Christensen, Jonathan J. Cole, Kathryn L. Cottingham, X. He, James R. Hodgson, J.F. Kitchell, et al. 1995. “Biological Control of Eutrophication in Lakes”. Environ. Sci. Technol. 29: 784-86.
Oviatt, C., P. Doering, B.L. Nowicki, L. Reed, Jonathan J. Cole, and J. Frithsen. 1995. “An Ecosystem Level Experiment on Nutrient Limitation in Temperate Coastal Marine Environments”. Mar. Ecol. Prog. Ser. 116: 171-79.
Ochs, C. A., Jonathan J. Cole, and Gene E. Likens. 1995. “Population Dynamics of Bacterioplankton in an Oligotrophic Lake”. J. Plank. Res. 17: 365-91.
Cole, Jonathan J., and Michael L. Pace. 1995. “Why Measure Bacterial Production? [reply to Comment by Jahnke and Craven]”. Limnol. Oceanogr. 40: 441-44. http://www.caryinstitute.org/reprints/Why_measure_bacterial_production.pdf.
Ashizawa, D., and Jonathan J. Cole. 1994. “Long-Term Temperature Trends of the Hudson River: A Study of the Historical Data”. Estuaries 17: 166-71.
Pace, Michael L., and Jonathan J. Cole. 1994. “Primary and Bacterial Production in Lakes: Are They Coupled over Depth?”. J. Plank. Res. 16: 661-72.
Cole, Jonathan J., Nina F. Caraco, G.W. Kling, and Timothy K. Kratz. 1994. “Carbon Dioxide Supersaturation in the Surface Waters of Lakes”. Science 265: 1568-70. http://www.caryinstitute.org/reprints/Carbon_dioxide_supersaturation.pdf.
Pace, Michael L., and Jonathan J. Cole. 1994. “Comparative and Experimental Approaches to Top-down and Bottom-up Regulation of Bacteria”. Microb. Ecol. 28: 181-93.
Cole, Jonathan J., and Nina F. Caraco. 1993. “Nitrogen Pollution of Coastal Waters: The Role of Anthropogenically Derived Atmospheric Deposition”. Report to the New York State Electric Power Pool [IES, Millbrook, New York].