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Dr. Jonathan J. Cole

Limnologist | PhD, Cornell University

Expertise
Freshwater ecosystems, biogeochemistry

Jonathan J. Cole: In Memory
January 14, 1953 - July 25, 2023

Cole had been an emeritus scientist since 2014. Cole was a member of both the National Academy of Sciences and the American Academy of Arts and Sciences. A former president of the Association for the Sciences of Limnology and Oceanography, Cole was also a fellow of the American Association for the Advancement of Science and the American Geophysical Union. He was the author or co-author of about 230 peer reviewed scientific papers and several books.

During his active research career, Cole studied the sources of carbon and its movements in rivers, lakes, and estuaries, with a focus on the connections between these ecosystems and their surrounding watersheds. He and colleagues showed that at a global scale, up to 50 percent of the carbon that is stored in soils is eventually exported to streams, rivers, and lakes, in the form of particles and dissolved organic matter or turned to carbon dioxide in these inland aquatic environments. The realization that inland waters play a role in the regional and global carbon cycle changed the way modelers have approached carbon sequestration on land.

Because of this large transfer of land-based carbon to surface waters, the food webs of aquatic ecosystems are often partially supported by their watersheds. Working in both the Hudson River and in Wisconsin lakes, Cole and colleagues determined the size of this subsidy to fish populations and to invertebrate consumers. To put the question in simple terms, are fish and other aquatic consumers made of carbon that originates from aquatic plants or maple leaves?

Cole’s research showed that a surprisingly large fraction of the biomass of fish (and of the aquatic invertebrates they consume) is derived from land-based carbon. Using ambient radiocarbon (carbon-14), Caraco and Cole determined that organic carbon in the Hudson River is 1,500 to 5,000 years old. Some invertebrates in the Hudson, notably zooplankton, consume this ancient carbon. Thus, the food web in the Hudson is connected to carbon that was sequestered on land thousands of years ago.

Studies of food webs appear solely academic, but these answers have struck a chord with fishermen. As fishing is the second largest recreational activity in the United States, being able to talk with fishermen about where their fish come from offers an exciting opportunity to educate and interest a significant public group about ecology.

Cole, Jonathan J., B. L. Peierls, Nina F. Caraco, and Michael L. Pace. 1993. “Nitrogen Loading of Rivers As a Human-Driven Process”. In M. J. McDonnell and S. T. A. Pickett (eds.). Humans As Components of Ecosystems: The Ecology of Subtle Human Effects and Populated Areas, 141-57. Springer-Verlag New York, Inc.
Cole, Jonathan J., and Nina F. Caraco. 1993. “Nitrogen Pollution of Coastal Waters: The Role of Anthropogenically Derived Atmospheric Deposition”. Report to the New York State Electric Power Pool [IES, Millbrook, New York].
Cole, Jonathan J., Michael L. Pace, Nina F. Caraco, and G.S. Steinhart. 1993. “Bacterial Biomass and Cell Size Distributions in Lakes: More and Larger Cells in Anoxic Waters”. Limnol. Oceanogr. 38: 1627-32. http://www.caryinstitute.org/reprints/Bacterial_biomass_and_cell_size_distributions_in_lakes.pdf.
Cole, Jonathan J., J.M. Lane, Roxanne Marino, and Robert W. Howarth. 1993. “Molybdenum Assimilation by Cyanobacteria and Phytoplankton in Freshwater and Salt Water”. Limnol. Oceanogr. 38: 25-35. http://www.caryinstitute.org/reprints/Molybdenum_assimilation_by_cyanobacteria_and_phytoplankton.pdf.
Caraco, Nina F., Jonathan J. Cole, and Gene E. Likens. 1993. “Sulfate Control of Phosphorus Availability in Lakes: A Test and Re-Evaluation of Hasler and Einsele’s Model”. Hydrobiologia 253: 275-80.
Caraco, Nina F., Jonathan J. Cole, and Gene E. Likens. 1992. “New and Recycled Primary Production in an Oligotrophic Lake: Insights for Summer Phosphorus Dynamics”. Limnol. Oceanogr. 37: 590-602. http://www.caryinstitute.org/reprints/New_and_recycled_primary_production_in_an_oligotrophic_lake.pdf.
Cole, Jonathan J., Nina F. Caraco, and B. L. Peierls. 1992. “Can Phytoplankton Maintain a Positive Carbon Balance in a Turbid, Freshwater, Tidal Estuary?”. Limnol. Oceanogr. 37: 1608-17. http://www.caryinstitute.org/reprints/Can_phytoplankton_achieve_a_positive_carbon_balance.pdf.
Peierls, B. L., Nina F. Caraco, Michael L. Pace, and Jonathan J. Cole. 1991. “Human Influence on River Nitrogen”. Nature 350: 386-87.
Caraco, Nina F., Jonathan J. Cole, and Gene E. Likens. 1991. “Phosphorus Release from Anoxic Sediments: Lakes That Break the Rules”. Verh. Int. Ver. Limnol. 24: 2985-88.
Cole, Jonathan J., Nina F. Caraco, and B. L. Peierls. 1991. “Phytoplankton Primary Production in the Tidal, Freshwater Hudson River, New York (USA)”. Verh. Int. Ver. Limnol. 24: 1715-19.
Caraco, Nina F., Jonathan J. Cole, and Gene E. Likens. 1991. “A Cross-System Study of Phosphorus Release from Lake Sediments”. In J. Cole, G. Lovett, and S. Findlay (eds.). Comparative Analyses of Ecosystems: Patterns, Mechanisms and Theories, 241-58. Springer-Verlag New York, Inc.
Findlay, Stuart E. G., Michael L. Pace, D. Lints, Jonathan J. Cole, Nina F. Caraco, and B. L. Peierls. 1991. “Weak Coupling of Bacterial and Algal Production in a Heterotrophic Ecosystem, the Hudson Estuary”. Limnol. Oceanogr. 36: 268-78. http://www.caryinstitute.org/reprints/Weak_coupling_of_bacterial_and_algal_production.pdf.
Caraco, Nina F., Jonathan J. Cole, Gene E. Likens, and S.S. Nolan. 1990. “Atmospheric Inputs of Phosphorus to an Oligotrophic Lake”. In I. G. Poppoff, C. R. Goldman, S. L. Loeb, and L. B. Leopold (eds.), 361-69. Proceedings International Mountain Watershed Symposium Subalpine Processes and Water Quality, South Lake Tahoe, California, June 1988.
Caraco, Nina F., Jonathan J. Cole, and Gene E. Likens. 1990. “A Comparison of Phosphorus Immobilization in Sediments of Freshwater and Coastal Marine Systems”. Biogeochemistry 9: 277-90.
Cole, Jonathan J., Nina F. Caraco, and Gene E. Likens. 1990. “Short-Range Atmospheric Transport: A Significant Source of Phosphorus to an Oligotrophic Lake”. Limnol. Oceanogr. 35: 1230-37. http://www.caryinstitute.org/reprints/Short-range_atmospheric_transport.pdf.
Pace, Michael L., and Jonathan J. Cole. 1989. “What Questions, Systems, or Phenomena Warrant Long-Term Ecological Study?”. In G. E. Likens (ed.). Long-Term Studies in Ecology: Approaches and Alternatives, 183-85. Springer-Verlag New York, Inc.
Caron, D.A., L.P. Madin, and Jonathan J. Cole. 1989. “Composition and Degradation of Salp Fecal Pellets: Implications for Vertical Flux in Oceanic Environments”. J. Mar. Res. 47: 829-50.
Cole, Jonathan J., Nina F. Caraco, David L. Strayer, C. A. Ochs, and S.S. Nolan. 1989. “A Detailed Carbon Budget As an Ecosystem-Level Calibration of Bacterial Respiration in an Oligotrophic Lake During Mid-Summer”. Limnol. Oceanogr. 34: 286-96.
Caraco, Nina F., Jonathan J. Cole, and Gene E. Likens. 1989. “Evidence for Sulphate-Controlled Phosphorus Release from Sediments of Aquatic Systems”. Nature 341: 316-18.
Cole, Jonathan J., Stuart E. G. Findlay, and Michael L. Pace. 1988. “Bacterial Production in Fresh and Saltwater Ecosystems: A Cross-System Overview”. Mar. Ecol. Prog. Ser. 43: 1-10.