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Dr. Jonathan J. Cole

Limnologist | PhD, Cornell University

Expertise
Freshwater ecosystems, biogeochemistry

Jonathan J. Cole: In Memory
January 14, 1953 - July 25, 2023

Cole had been an emeritus scientist since 2014. Cole was a member of both the National Academy of Sciences and the American Academy of Arts and Sciences. A former president of the Association for the Sciences of Limnology and Oceanography, Cole was also a fellow of the American Association for the Advancement of Science and the American Geophysical Union. He was the author or co-author of about 230 peer reviewed scientific papers and several books.

During his active research career, Cole studied the sources of carbon and its movements in rivers, lakes, and estuaries, with a focus on the connections between these ecosystems and their surrounding watersheds. He and colleagues showed that at a global scale, up to 50 percent of the carbon that is stored in soils is eventually exported to streams, rivers, and lakes, in the form of particles and dissolved organic matter or turned to carbon dioxide in these inland aquatic environments. The realization that inland waters play a role in the regional and global carbon cycle changed the way modelers have approached carbon sequestration on land.

Because of this large transfer of land-based carbon to surface waters, the food webs of aquatic ecosystems are often partially supported by their watersheds. Working in both the Hudson River and in Wisconsin lakes, Cole and colleagues determined the size of this subsidy to fish populations and to invertebrate consumers. To put the question in simple terms, are fish and other aquatic consumers made of carbon that originates from aquatic plants or maple leaves?

Cole’s research showed that a surprisingly large fraction of the biomass of fish (and of the aquatic invertebrates they consume) is derived from land-based carbon. Using ambient radiocarbon (carbon-14), Caraco and Cole determined that organic carbon in the Hudson River is 1,500 to 5,000 years old. Some invertebrates in the Hudson, notably zooplankton, consume this ancient carbon. Thus, the food web in the Hudson is connected to carbon that was sequestered on land thousands of years ago.

Studies of food webs appear solely academic, but these answers have struck a chord with fishermen. As fishing is the second largest recreational activity in the United States, being able to talk with fishermen about where their fish come from offers an exciting opportunity to educate and interest a significant public group about ecology.

Strayer, David L., E.A. Blair, Nina F. Caraco, Jonathan J. Cole, Stuart E. G. Findlay, W.C. Nieder, and Michael L. Pace. 2005. “Interactions Between Alien Species and Restoration of Large-River Ecosystems”. Arch. Hydrobiol. Suppl. 155: 133-45.
Bade, Darren L., Stephen R. Carpenter, Jonathan J. Cole, Paul C. Hanson, and R.H. Hesslein. 2004. “Controls of d13C-DIC in Lakes: Geochemistry, Lake Metabolism, and Morphometry”. Limnol. Oceanogr. 49: 1160-72. http://aslo.org/lo/toc/vol_49/issue_4/1160.pdf.
Raymond, Peter A., J.E. Bauer, Nina F. Caraco, Jonathan J. Cole, B. Longworth, and S.T. Petsch. 2004. “Controls on the Variability of Organic Matter and Dissolved Inorganic Carbon Age in Northeast U.S. Rivers”. Mar. Chem. 92: 353-66.
Caraco, Nina F., and Jonathan J. Cole. 2004. “When Terrestrial Organic Matter Is Sent down the River: Importance of Allochthonous C Inputs to the Metabolism in Lakes and Rivers”. In A. Polis, M. E. Power, and G. Huxell (eds.). Food Webs at the Landscape Level, 301-16. University of Chicago Press, Chicago, Illinois.
Maranger, R.J., Michael L. Pace, P. A. del Giorgio, Nina F. Caraco, and Jonathan J. Cole. 2004. “Longitudinal Spatial Patterns of Bacterial Production and Respiration in a Large River-Estuary: Implications for Ecosystem Carbon Consumption”. Ecosystems 8: 1-14. http://www.caryinstitute.org/reprints/Maranger_et_al_Ecosystems.pdf.
Bastviken, D., Jonathan J. Cole, Michael L. Pace, and Lars J. Tranvik. 2004. “Methane Emissions from Lakes: Dependence of Lake Characteristics, Two Regional Assessments, and a Global Estimate”. Global Biogeochem. Cycles 18. http://www.caryinstitute.org/reprints/Bastviken_et_al_GBC_2004.pdf.
Pace, Michael L., Jonathan J. Cole, Stephen R. Carpenter, J.F. Kitchell, James R. Hodgson, Matthew C. Van de Bogert, Darren L. Bade, E.S. Kritzberg, and D. Bastviken. 2004. “Whole Lake Carbon-13 Additions Reveal Terrestrial Support of Aquatic Food Webs”. Nature 427: 240-43. http://www.caryinstitute.org/reprints/Pace_etal_Nature2004.pdf.
Kritzberg, E.S., Jonathan J. Cole, Michael L. Pace, W. Granéli, and Darren L. Bade. 2004. “Autochthonous and Allochthonous Carbon Sources to Bacteria: Results from Whole Lake 13C Addition Experiments”. Limnol. Oceanogr. 49: 588-96. http://www.caryinstitute.org/reprints/Kritzberg_et_al_LO_04.pdf.
Caraco, Nina F., and Jonathan J. Cole. 2003. “The Importance of Organic Nitrogen Production in Aquatic Systems: A Landscape Perspective”. In S. E. G. Findlay, and R. L. Sinsabaugh (eds.). Aquatic Ecosystems: Interactivity of Dissolved Organic Matter, 263-83. Academic Press/Elsevier Science, San Diego, California.
Raymond, Peter A., and Jonathan J. Cole. 2003. “Alkalinity Export and Carbon Balance, a Response to Lackner”. Science 302: 985.
Canham, Charles D., Jonathan J. Cole, and W.K. Lauenroth. 2003. “The Role of Modeling in Ecosystem Science”. In Canham, C. D., J. S. Cole, and W. K. Lauenroth (eds.), 1-12. Models in Ecosystem Science. Princeton University Press, Princeton, New Jersey. http://www.caryinstitute.org/reprints/ch_1_Canham_CC_IX_book.pdf.
Houser, J.N., Darren L. Bade, Jonathan J. Cole, and Michael L. Pace. 2003. “The Dual Influences of Dissolved Organic Carbon on Hypolimnetic Metabolism: Organic Substrate and Photosynthetic Inhibition”. Biogeochemistry 64: 247-69. http://www.caryinstitute.org/reprints/Houser_et_al_2003.pdf.
Harris, G. P., S. W. Bigelow, Jonathan J. Cole, H. Cyr, L.L. Janus, A. P. Kinzig, J.F. Kitchell, et al. 2003. “The Role of Models in Ecosystem Management”. In C. D. Canham, J. J. Cole, and W. K. Lauenroth (eds.). Models in Ecosystem Science, 299-307. Princeton University Press, Princeton, New Jersey.
Raymond, Peter A., and Jonathan J. Cole. 2003. “Increase in the Export of Alkalinity from North America’s Largest River”. Science 301: 88-91. http://www.caryinstitute.org/reprints/Raymond_Cole_2003.pdf.
Raymond, Peter A., and Jonathan J. Cole. 2003. “Increased Alkalinity in the Mississippi, a Response to Jones Et Al”. Science 302: 985-87.
Marino, Roxanne, Robert W. Howarth, F. Chan, Jonathan J. Cole, and Gene E. Likens. 2003. “Sulfate Inhibition of Molybdenum-Dependent Nitrogen Fixation by Planktonic Cyanobacteria under Seawater Conditions: A Non-Reversible Effect”. Hydrobiologia 500: 277-93.
Caraco, Nina F., Jonathan J. Cole, Gene E. Likens, Gary M. Lovett, and Kathleen C. Weathers. 2003. “Variation in NO3 Export from Flowing Waters of Vastly Different Sizes: Does One Model Fit All?”. Ecosystems 6: 344-52. http://www.caryinstitute.org/reprints/scale_no3.pdf.
Caraco, Nina F., and Jonathan J. Cole. 2002. “Contrasting Impacts of a Native and Alien Macrophyte on Dissolved Oxygen in a Large River”. Ecol. Appl. 12: 1496-1509. http://www.caryinstitute.org/reprints/trapa_vs_vall.pdf.
Carpenter, Stephen R., Jonathan J. Cole, J.F. Kitchell, and Michael L. Pace. 2002. “Pathways of Organic Carbon Utilization in Small Lakes: Results from a Whole-Lake 13C Addition and Coupled Model”. Limnol. Oceanogr. 47: 1664-75. http://aslo.org/lo/toc/vol_47/issue_6/1664.pdf.
Prairie, Y.T., D.F. Bird, and Jonathan J. Cole. 2002. “The Summer Metabolic Balance in the Epilimnion of Southeastern Quebec Lakes”. Limnol. Oceanogr. 47: 321:21:00. http://www.caryinstitute.org/reprints/The_summer_metabolic_balance_in_the_epilimnion_of_southeastern_Quebec_lakes.pdf.