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Dr. Jonathan J. Cole

Limnologist | PhD, Cornell University

Expertise
Freshwater ecosystems, biogeochemistry

Jonathan J. Cole: In Memory
January 14, 1953 - July 25, 2023

Cole had been an emeritus scientist since 2014. Cole was a member of both the National Academy of Sciences and the American Academy of Arts and Sciences. A former president of the Association for the Sciences of Limnology and Oceanography, Cole was also a fellow of the American Association for the Advancement of Science and the American Geophysical Union. He was the author or co-author of about 230 peer reviewed scientific papers and several books.

During his active research career, Cole studied the sources of carbon and its movements in rivers, lakes, and estuaries, with a focus on the connections between these ecosystems and their surrounding watersheds. He and colleagues showed that at a global scale, up to 50 percent of the carbon that is stored in soils is eventually exported to streams, rivers, and lakes, in the form of particles and dissolved organic matter or turned to carbon dioxide in these inland aquatic environments. The realization that inland waters play a role in the regional and global carbon cycle changed the way modelers have approached carbon sequestration on land.

Because of this large transfer of land-based carbon to surface waters, the food webs of aquatic ecosystems are often partially supported by their watersheds. Working in both the Hudson River and in Wisconsin lakes, Cole and colleagues determined the size of this subsidy to fish populations and to invertebrate consumers. To put the question in simple terms, are fish and other aquatic consumers made of carbon that originates from aquatic plants or maple leaves?

Cole’s research showed that a surprisingly large fraction of the biomass of fish (and of the aquatic invertebrates they consume) is derived from land-based carbon. Using ambient radiocarbon (carbon-14), Caraco and Cole determined that organic carbon in the Hudson River is 1,500 to 5,000 years old. Some invertebrates in the Hudson, notably zooplankton, consume this ancient carbon. Thus, the food web in the Hudson is connected to carbon that was sequestered on land thousands of years ago.

Studies of food webs appear solely academic, but these answers have struck a chord with fishermen. As fishing is the second largest recreational activity in the United States, being able to talk with fishermen about where their fish come from offers an exciting opportunity to educate and interest a significant public group about ecology.

Wilkinson, Grace M., Michael L. Pace, and Jonathan J. Cole. 2013. “Terrestrial Dominance of Organic Matter in North Temperate Lakes”. Global Biogeochemical Cycles 27 (1): 43-51. doi:10.1029/2012GB004453.
Wilkinson, Grace M., Stephen R. Carpenter, Jonathan J. Cole, Michael L. Pace, and Carol Yang. 2013. “Terrestrial Support of Pelagic Consumers: Patterns and Variability Revealed by a Multilake Study”. Freshwater Biology, n/a - n/a. doi:10.1111/fwb.12189.
Batt, Ryan D., William A. Brock, Stephen R. Carpenter, Jonathan J. Cole, Michael L. Pace, and David A. Seekell. 2013. “Asymmetric Response of Early Warning Indicators of Phytoplankton Transition to and from Cycles”. Theoretical Ecology 6 (3): 285-93. doi:10.1007/s12080-013-0190-8.
Batt, Ryan D., Stephen R. Carpenter, Jonathan J. Cole, Michael L. Pace, and Robert A. Johnson. 2013. “Changes in Ecosystem Resilience Detected in Automated Measures of Ecosystem Metabolism During a Whole-Lake Manipulation”. Proceedings of the National Academy of Sciences 110 (43): 17398-403. doi:10.1073/pnas.1316721110.
Mendonça, Raquel, Sarian Kosten, Sebastian Sobek, Nathan Barros, Jonathan J. Cole, Lars J. Tranvik, and Fábio Roland. 2012. “Hydroelectric Carbon Sequestration”. Nature Geoscience 5 (12): 838-40. doi:10.1038/ngeo1653.
Cole, Jonathan J. 2012. “The Carbon Cycle, With a Brief Introduction to Global Biogeochemistry”. In K. C. Weathers, D. L. Strayer and G. E. Likens (eds.). Fundamentals of Ecosystem Science, 109-35. Academic Press, Inc.
Read, Jordan S., and Jonathan J. Cole. 2012. “Lake-Size Dependency of Wind Shear and Convection As Controls on Gas Exchange”. Geophys. Res. Lett. 39. doi:10.1029/2012GL051886.
Staehr, Peter A., J.M. Testa, W.M. Kemp, Jonathan J. Cole, K. Sand-Jensen, and S.V. Smith. 2012. “The Metabolism of Aquatic Ecosystems: History, Applications, and Future Challenges”. Aquat. Sci. 74: 15-29. doi:10.1007/s00027-011-0199-2.
Pace, Michael L., I. Reche, Jonathan J. Cole, A. Fernandez-Barbero, I.P. Mazuecos, and Y.T. Prairie. 2012. “PH Change Induces Shifts in the Size and Light Absorption of Dissolved Organic Matter”. Biogeochemistry 108: 109-18. doi:10.1007/s10533-011-9576-0.
Bechtold, Heather A., Emma J. Rosi-Marshall, Dana R Warren, and Jonathan J. Cole. 2012. “A Practical Method for Measuring Integrated Solar Radiation Reaching Streambeds Using Photodegrading Dyes”. Freshwater Science. The Society for Freshwater Science, 1070-77. http://www.jnabs.org/doi/abs/10.1899/12-003.1.
Batt, Ryan D., Stephen R. Carpenter, Jonathan J. Cole, Michael L. Pace, Timothy J. Cline, Robert A. Johnson, and David A. Seekell. 2012. “Resources Supporting the Food Web of a Naturally Productive Lake”. Limnology and Oceanography 57 (5): 1443-52. doi:10.4319/lo.2012.57.5.1443.
Van de Bogert, Matthew C., Darren L. Bade, Stephen R. Carpenter, Jonathan J. Cole, Michael L. Pace, Paul C. Hanson, and Owen C. Langman. 2012. “Spatial Heterogeneity Strongly Affects Estimates of Ecosystem Metabolism in Two North Temperate Lakes”. Limnology and Oceanography 57 (6): 1689-1700. doi:10.4319/lo.2012.57.6.1689.
Rubbo, Michael J., Lisa K. Belden, Sara I. Storrs-Mendez, Jonathan J. Cole, and Joseph M. Kiesecker. 2012. “Species Loss in the Brown World: Are Heterotrophic Systems Inherently Stable?”. Aquat. Sci. 74: 397-404. doi:10.1007/s00027-011-0234-3.
Brosseau, Chase J., Timothy J. Cline, Jonathan J. Cole, James R. Hodgson, Michael L. Pace, and Brian C. Weidel. 2012. “Do Daphnia Use Metalimnetic Organic Matter in a North Temperate Lake? An Analysis of Vertical Migration”. Inland Waters 2: 193-98. doi:10.5268/IW-2.4.513.
Cole, Jonathan J., and Christopher T. Solomon. 2012. “Terrestrial Support of Zebra Mussels and the Hudson River Food Web: A Multi-Isotope, Bayesian Analysis”. Limnology and Oceanography 57 (6): 1802-15. doi:10.4319/lo.2012.57.6.1802.
Cole, Jonathan J. 2012. “Freshwater in Flux”. Nature Geoscience 6 (1): 13-14. doi:10.1038/ngeo1696.
Downing, J.A., Jonathan J. Cole, C. M. Duarte, J.J. Middelburg, Y.T. Prairie, P. Kortelainen, R.G. Striegl, William H. McDowell, and Lars J. Tranvik. 2012. “Global Abundance and Size Distribution of Streams and Rivers”. Inland Waters 2 (4): 229-36. doi:10.5268/IW-2.4.502.
Chapin, F. S., III, Mary E. Power, and Jonathan J. Cole. 2011. “Coupled Biogeochemical Cycles and Earth Stewardship”. Front. Ecol. Environ. 9: 3-3.
Coloso, J.J., Michael L. Pace, and Jonathan J. Cole. 2011. “Difficulty in Discerning Drivers of Lake Ecosystem Metabolism With High Frequency Data”. Ecosystems 14: 935-48.
Carpenter, Stephen R., Jonathan J. Cole, Michael L. Pace, Ryan D. Batt, William A. Brock, Timothy J. Cline, J.J. Coloso, et al. 2011. “Early Warnings of Regime Shifts: A Whole-Ecosystem Experiment”. Science 332: 1079-82. doi:10.1126/science 1203672.